Package: relMix 1.4
relMix: Relationship Inference for DNA Mixtures
Analysis of DNA mixtures involving relatives by computation of likelihood ratios that account for dropout and drop-in, mutations, silent alleles and population substructure. This is useful in kinship cases, like non-invasive prenatal paternity testing, where deductions about individuals' relationships rely on DNA mixtures, and in criminal cases where the contributors to a mixed DNA stain may be related. Relationships are represented by pedigrees and can include kinship between more than two individuals. The main function is relMix() and its graphical user interface relMixGUI(). The implementation and method is described in Dorum et al. (2017) <doi:doi.org/10.1007/s00414-016-1526-x>, Hernandis et al. (2019) <doi:doi.org/10.1016/j.fsigss.2019.09.085> and Kaur et al. (2016) <doi:doi.org/10.1007/s00414-015-1276-1>.
Authors:
relMix_1.4.tar.gz
relMix_1.4.zip(r-4.5)relMix_1.4.zip(r-4.4)relMix_1.4.zip(r-4.3)
relMix_1.4.tgz(r-4.4-any)relMix_1.4.tgz(r-4.3-any)
relMix_1.4.tar.gz(r-4.5-noble)relMix_1.4.tar.gz(r-4.4-noble)
relMix_1.4.tgz(r-4.4-emscripten)relMix_1.4.tgz(r-4.3-emscripten)
relMix.pdf |relMix.html✨
relMix/json (API)
NEWS
| # Install 'relMix' in R: |
| install.packages('relMix', repos = c('https://gdorum.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/gdorum/relmix/issues
Last updated 5 months agofrom:a3d8200b7f. Checks:OK: 5 NOTE: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Aug 27 2024 |
| R-4.5-win | NOTE | Aug 27 2024 |
| R-4.5-linux | NOTE | Aug 27 2024 |
| R-4.4-win | OK | Aug 27 2024 |
| R-4.4-mac | OK | Aug 27 2024 |
| R-4.3-win | OK | Aug 27 2024 |
| R-4.3-mac | OK | Aug 27 2024 |
Exports:allGenoscheckFrequenciesFilecheckMixtureFilecheckPedigreeFilecheckReferenceFilecreateDatamatrixgenerateMixmixLikDroprelMixrelMixGUI
Dependencies:askpassbase64encbslibcachemclicommonmarkcpp11crayoncrulcurldata.tabledigestevaluateFamiliasfastmapflextablefontawesomefontBitstreamVerafontLiberationfontquiverfsgdtoolsgfontsgluegWidgets2gWidgets2tcltkhighrhtmltoolshttpcodehttpuvjquerylibjsonlitekinship2knitrlaterlatticelifecyclemagrittrMatrixmemoisemimeofficeropensslpedFamiliaspedmutpedtoolspromisesquadprogR6raggrappdirsRcpprlangrmarkdownRsolnpsassshinysourcetoolssyssystemfontstextshapingtinytextriebeardtruncnormurltoolsuuidwithrxfunxml2xtableyamlzip
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Find all possible genotypes | allGenos |
| Load and check a frequency file | checkFrequenciesFile |
| Load and check a mixture file | checkMixtureFile |
| Check a pedigree file | checkPedigreeFile |
| Check a reference profiles file | checkReferenceFile |
| Create data matrix with possible genotype combinations for specified individuals | createDatamatrix |
| Allele database | db |
| Allele database for 22 markers | db2 |
| Create a mixture of genotypes with simulated drop-in and dropout | generateMix |
| Likelihoods for DNA mixtures with dropout and dropin | mixLikDrop |
| Relationship inference based on mixtures | relMix |
| GUI for relMix | relMixGUI |
